Data Decompression
All of the HDinHD datasets are made available as either compressed files or tar archives (GNU tar, GNU gzip). On most Macintosh and Linux computers, tools are available to decompress these files. On Windows computers, you may need to download and install a decompression application. We recommend either WinZip or 7-Zip.
Mouse Allelic Series
A longitudinal mouse in-vivo project developed collaboratively between MGH, Psychogenics (PGI) and CHDI. See publications:
- Langfelder, P., Cantle, J.P., Chatzopoulou, D., Wang, N., Gao, F., , Al-Ramahi, Lu, X.H., Ramos, E.M., El-Zein, K., Zhao, Y., Deverasetty, S., Tebbe, A., Schaab, C., Lavery, D.J., Howland, D., Kwak, S., Botas, J., Aaronson, J.S., Rosinski, J., Coppola, G., Horvath, S., and Yang, X.W. Integrated genomics and proteomics define huntingtin CAG length-dependent networks in mice, Nat Neurosci., 19, 623–633
- Alexandrov, V., Brunner, D., Menalled, L.B., Kudwa, A., Watson-Johnson, J., Mazzella, M., Russell, I., Ruiz, M.C., Torello, J., Sabath, E., Sanchez, A., Gomez, M., Filipov, I., Cox, K., Kwan, M., Ghavami, A., Ramboz, S., Lager, B., Wheeler, V.C., Aaronson, J., Rosinski, J., Gusella, J.F., MacDonald, M.E., Howland, D., and Kwak, S. Large-scale phenome analysis defines a behavioral signature for Huntington’s disease genotype in mice, Nat Biotechnol., (2016)
- Langfelder P, Gao F, Wang N, Howland D, Kwak S, Vogt TF, Aaronson JS, Rosinski J, Coppola G, Horvath S, Yang XW. MicroRNA signatures of endogenous Huntingtin CAG repeat expansion in mice. PLoS One. 2018 Jan 11;13(1):e0190550.
Animal and Sample Annotation File (Master Decoder Ring)
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Molecular Data from Striatum
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Molecular Data from Cortex
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Molecular Data from Cerebellum
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Molecular Data from Hippocampus
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Molecular Data from Liver
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Molecular Data from Gastrocnemius
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Molecular Data from Gonadal Adipose
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Molecular Data from Heart
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Molecular Data from Tissue Survey
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Behavioral Data
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